OmicKriging (version 1.0)

corlist: data

Description

List of 2 correlation matrices, corlist[1] is the genetic relationship matrix of the intrinsic growth rate samples calculated by GCTA from 43,182 regulome SNPs. corlist[2] is the gene expression correlation matrix from the intrinsic growth rate samples. The function readcorlist generated this list.

Usage

data(corlist)

format

The format is: List of 2 $ : num [1:159, 1:159] 1.062 0.0909 0.0697 0.0884 0.085 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:159] "NA12750" "NA11831" "NA12146" "NA11882" ... .. ..$ : chr [1:159] "NA12750" "NA11831" "NA12146" "NA11882" ... $ : num [1:159, 1:159] 1 0.969 0.959 0.964 0.961 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:159] "NA10846" "NA10847" "NA12144" "NA12145" ... .. ..$ : chr [1:159] "NA10846" "NA10847" "NA12144" "NA12145" ...

source

Im, HK. et al. (2012) Mixed effects modeling of proliferation rates in cell-based models: consequence for pharmacogenomics and cancer. PLoS Genetics 8(2):e1002525.

http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1002525

Examples

data(corlist)
str(corlist)