OmicNavigator (version 1.13.13)

addTests: Add tests

Description

Add tests

Usage

addTests(study, tests, reset = FALSE)

Value

Returns the original onStudy object passed to the argument

study, but modified to include the newly added data

Arguments

study

An OmicNavigator study created with createStudy

tests

The tests from the study. The input object is a list of lists. Each element of the top-level list is a model. The names should be the modelIDs. For each modelID, each element of the nested list is a test. The names should be the testIDs. The value should be a single character string describing the testID. To share tests across multiple models, use the modelID "default". Instead of a single character string, you can provide a list of metadata fields about each test. The field "description" will be used to derive the tooltip displayed in the app.

reset

Reset the data prior to adding the new data (default: FALSE). The default is to add to or modify any previously added data (if it exists). Setting reset = TRUE enables you to remove existing data you no longer want to include in the study.

Examples

  study <- createStudy("example")
  tests <- list(
    default = list(
      test_01 = "Name of first test",
      test_02 = "Name of second test"
    )
  )
  study <- addTests(study, tests)

  # Alternative: provide additional metadata about each test
  tests <- list(
    default = list(
      test_01 = list(
        description = "Name of first test",
        comparison_type = "treatment vs control",
        effect_size = "beta"
      ),
      test_02 = list(
        description = "Name of second test",
        comparison_type = "treatment vs control",
        effect_size = "logFC"
      )
    )
  )