getNodeFeatures

Get the features in a network node

A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.

John Blischak

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Terrence Ernst

Paul Nordlund

Justin Moore

Joe Dalen

Akshay Bhamidipati

Brett Engelmann

Marco Curado

Joe LoGrasso

AbbVie Inc. 

getNodeFeatures function

<dl><dt>study</dt>
<dd>An OmicNavigator study. Only accepts name of installed study
package.</dd>
<dt>annotationID</dt>
<dd>Filter by annotationID</dd>
<dt>termID</dt>
<dd>Filter by termID</dd>
<dt>libraries</dt>
<dd>The directories to search for installed study packages. If
left as <code>NULL</code> (the default), then
<code><a href="/link/installed.packages?package=OmicNavigator&version=1.13.13" data-mini-rdoc="OmicNavigator::installed.packages">installed.packages</a></code> will use the result of
<code><a href="/link/.libPaths?package=OmicNavigator&version=1.13.13" data-mini-rdoc="OmicNavigator::.libPaths">.libPaths</a></code>.</dd></dl>

Arguments

Get the features in a network node — getNodeFeatures

<dl>

<dt>study</dt>
<dd>An OmicNavigator study. Only accepts name of installed study
package.</dd>


<dt>annotationID</dt>
<dd>Filter by annotationID</dd>


<dt>termID</dt>
<dd>Filter by termID</dd>


<dt>libraries</dt>
<dd>The directories to search for installed study packages. If
left as <code>NULL</code> (the default), then
<code><a href='https://rdrr.io/r/utils/installed.packages.html'>installed.packages</a></code> will use the result of
<code><a href='https://rdrr.io/r/base/libPaths.html'>.libPaths</a></code>.</dd>

</dl>

Get the features in a network node

getNodeFeatures: Get the features in a network node

Description

Usage

Value

Arguments

See Also