installApp

In order to run the OmicNavigator web app on your local machine, the app must
be installed in the <code>www/</code> subdirectory of the R package. If you
installed the release tarball from the GitHub Releases page, then you already
have the app installed. If you installed directly from GitHub with
<code>install_github</code>, or if you want to use a different version of the app,
you can manually download and install the app.

A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.

John Blischak

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Terrence Ernst

Paul Nordlund

Justin Moore

Joe Dalen

Akshay Bhamidipati

Brett Engelmann

Marco Curado

Joe LoGrasso

AbbVie Inc. 

installApp function

<dl><dt>version</dt>
<dd>Version of the web app to install, e.g. <code>"1.0.0"</code></dd>
<dt>overwrite</dt>
<dd>Should an existing installation of the app be overwritten?</dd>
<dt>lib.loc</dt>
<dd>a character vector with path names of R libraries.
 See &#8216;Details&#8217; for the meaning of the default value of <code>NULL</code>.</dd>
<dt>...</dt>
<dd>Passed to <code><a href="/link/download.file?package=OmicNavigator&version=1.13.13" data-mini-rdoc="OmicNavigator::download.file">download.file</a></code>. If the download
fails, you may need to adjust the download settings for your operating
system. For example, to download with <code>wget</code>, pass the argument
<code>method = "wget"</code>.</dd></dl>

Arguments

Install the OmicNavigator web app — installApp

<dl>

<dt>version</dt>
<dd>Version of the web app to install, e.g. <code>"1.0.0"</code></dd>


<dt>overwrite</dt>
<dd>Should an existing installation of the app be overwritten?</dd>


<dt>lib.loc</dt>
<dd>a character vector with path names of R libraries.
 See &#8216;Details&#8217; for the meaning of the default value of <code>NULL</code>.</dd>


<dt>...</dt>
<dd>Passed to <code><a href='https://rdrr.io/r/utils/download.file.html'>download.file</a></code>. If the download
fails, you may need to adjust the download settings for your operating
system. For example, to download with <code>wget</code>, pass the argument
<code>method = "wget"</code>.</dd>

</dl>

Install the OmicNavigator web app

installApp: Install the OmicNavigator web app

Description

Usage

Value

Arguments