installStudy

A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.

John Blischak

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Terrence Ernst

Paul Nordlund

Justin Moore

Joe Dalen

Akshay Bhamidipati

Brett Engelmann

Marco Curado

Joe LoGrasso

Elyse Geoffroy

AbbVie Inc. 

installStudy function

<dl><dt>study</dt>
<dd>An OmicNavigator study to install (class <code>onStudy</code>)</dd>
<dt>requireValid</dt>
<dd>Require that study is valid before installing (passed to
<code>exportStudy</code>, which runs <code>validateStudy</code>)</dd>
<dt>library</dt>
<dd>Directory to install package. Defaults to first directory
returned by <code><a href="/link/.libPaths?package=OmicNavigator&version=1.16.0" data-mini-rdoc="OmicNavigator::.libPaths">.libPaths</a></code>.</dd></dl>

Arguments

Install a study as an R package — installStudy

<dl>

<dt>study</dt>
<dd>An OmicNavigator study to install (class <code>onStudy</code>)</dd>


<dt>requireValid</dt>
<dd>Require that study is valid before installing (passed to
<code>exportStudy</code>, which runs <code>validateStudy</code>)</dd>


<dt>library</dt>
<dd>Directory to install package. Defaults to first directory
returned by <code><a href='https://rdrr.io/r/base/libPaths.html'>.libPaths</a></code>.</dd>

</dl>

Install a study as an R package

installStudy: Install a study as an R package

Description

Usage

Value

Arguments

Details