addObjects

Experimental. Add arbitrary R objects to a study. These will be exported via
<code><a href="/link/saveRDS?package=OmicNavigator&version=1.19.0" data-mini-rdoc="OmicNavigator::saveRDS">saveRDS</a></code> and imported via <code><a href="/link/readRDS?package=OmicNavigator&version=1.19.0" data-mini-rdoc="OmicNavigator::readRDS">readRDS</a></code>.
This allows preserving the exact structure of complex R objects.

A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.

Brett Engelmann

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Terrence Ernst

John Blischak

Paul Nordlund

Justin Moore

Joe Dalen

Akshay Bhamidipati

Marco Curado

Joe LoGrasso

Elyse Geoffroy

AbbVie Inc. 

addObjects function

<dl><dt>study</dt>
<dd>An OmicNavigator study created with <code>createStudy</code></dd>
<dt>objects</dt>
<dd>Any arbitrary R objects from the study. The input object is a
list of objects (one per model). To share an object across multiple models,
use the modelID "default".</dd>
<dt>reset</dt>
<dd>Reset the data prior to adding the new data (default:
<code>FALSE</code>). The default is to add to or modify any previously added data
(if it exists). Setting <code>reset = TRUE</code> enables you to remove existing
data you no longer want to include in the study.</dd></dl>

Arguments

Experimental. Add arbitrary R objects to a study. These will be exported via
<code><a href='https://rdrr.io/r/base/readRDS.html'>saveRDS</a></code> and imported via <code><a href='https://rdrr.io/r/base/readRDS.html'>readRDS</a></code>.
This allows preserving the exact structure of complex R objects.

Add objects — addObjects

<dl>

<dt>study</dt>
<dd>An OmicNavigator study created with <code>createStudy</code></dd>


<dt>objects</dt>
<dd>Any arbitrary R objects from the study. The input object is a
list of objects (one per model). To share an object across multiple models,
use the modelID "default".</dd>


<dt>reset</dt>
<dd>Reset the data prior to adding the new data (default:
<code>FALSE</code>). The default is to add to or modify any previously added data
(if it exists). Setting <code>reset = TRUE</code> enables you to remove existing
data you no longer want to include in the study.</dd>

</dl>

addObjects: Add objects

Description

Usage

Arguments

Details

See Also