getInstalledStudies

Get installed OmicNavigator studies

A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.

Brett Engelmann

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Terrence Ernst

John Blischak

Paul Nordlund

Justin Moore

Joe Dalen

Akshay Bhamidipati

Marco Curado

Joe LoGrasso

Elyse Geoffroy

AbbVie Inc. 

getInstalledStudies function

<dl><dt>hasElements</dt>
<dd>Character vector of elements that must be present in the
study packages. Valid elements are 'metaFeatures', 'results',
'enrichments', 'reports', 'plots', 'assays', 'samples', 'features',
'resultsLinkouts', and 'metaAssays'. If <code>NULL</code> (default), then all
installed OmicNavigator studies are returned, regardless of their contents.</dd>
<dt>libraries</dt>
<dd>Character vector of library directories to search for study
packages. If <code>NULL</code>, uses <code>.libPaths</code>.</dd></dl>

Arguments

Get installed OmicNavigator studies — getInstalledStudies

<dl>

<dt>hasElements</dt>
<dd>Character vector of elements that must be present in the
study packages. Valid elements are 'metaFeatures', 'results',
'enrichments', 'reports', 'plots', 'assays', 'samples', 'features',
'resultsLinkouts', and 'metaAssays'. If <code>NULL</code> (default), then all
installed OmicNavigator studies are returned, regardless of their contents.</dd>


<dt>libraries</dt>
<dd>Character vector of library directories to search for study
packages. If <code>NULL</code>, uses <code>.libPaths</code>.</dd>

</dl>

Get installed OmicNavigator studies

getInstalledStudies: Get installed OmicNavigator studies

Description

Usage

Value

Arguments

See Also