getLinkFeatures

Get the shared features in a network link

A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user's local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.

Brett Engelmann

OmicNavigator

Open-Source Software for 'Omic' Data Analysis and Visualization

Terrence Ernst

John Blischak

Paul Nordlund

Justin Moore

Joe Dalen

Akshay Bhamidipati

Marco Curado

Joe LoGrasso

Elyse Geoffroy

AbbVie Inc. 

getLinkFeatures function

<dl><dt>study</dt>
<dd>An OmicNavigator study. Only accepts name of installed study
package.</dd>
<dt>annotationID</dt>
<dd>Filter by annotationID</dd>
<dt>termID1, termID2</dt>
<dd>Linked terms to find overlapping features</dd>
<dt>libraries</dt>
<dd>Character vector of library directories to search for study
packages. If <code>NULL</code>, uses <code>.libPaths</code>.</dd></dl>

Arguments

Get the shared features in a network link — getLinkFeatures

<dl>

<dt>study</dt>
<dd>An OmicNavigator study. Only accepts name of installed study
package.</dd>


<dt>annotationID</dt>
<dd>Filter by annotationID</dd>


<dt>termID1, termID2</dt>
<dd>Linked terms to find overlapping features</dd>


<dt>libraries</dt>
<dd>Character vector of library directories to search for study
packages. If <code>NULL</code>, uses <code>.libPaths</code>.</dd>

</dl>

Get the shared features in a network link

getLinkFeatures: Get the shared features in a network link

Description

Usage

Value

Arguments

See Also