OmopSketch (version 0.3.2)

plotConceptSetCounts: Plot the concept counts of a summariseConceptSetCounts output.

Description

Plot the concept counts of a summariseConceptSetCounts output.

Usage

plotConceptSetCounts(result, facet = NULL, colour = NULL)

Value

A ggplot2 object showing the concept counts.

Arguments

result

A summarised_result object (output of summariseConceptSetCounts).

facet

Columns to face by. Formula format can be provided. See possible columns to face by with: visOmopResults::tidyColumns().

colour

Columns to colour by. See possible columns to colour by with: visOmopResults::tidyColumns().

Examples

# \donttest{
library(dplyr)

cdm <- mockOmopSketch()

result <- cdm |>
  summariseConceptSetCounts(
    conceptSet = list(
      "Renal agenesis" = 194152,
      "Manic mood" = c(4226696, 4304866, 37110496, 40371897)
    )
  )

result |>
  filter(variable_name == "Number subjects") |>
  plotConceptSetCounts(facet = "codelist_name", colour = "standard_concept_name")

PatientProfiles::mockDisconnect(cdm)
# }