summariseConceptCounts

Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.

Cecilia Campanile

OmopSketch

Characterise Tables of an OMOP Common Data Model Instance

Marta Alcalde-Herraiz

Kim Lopez-Guell

Elin Rowlands

Edward Burn

Martí Català

summariseConceptCounts function

<dl><dt>cdm</dt>
<dd>A cdm object</dd>
<dt>conceptId</dt>
<dd>List of concept IDs to summarise.</dd>
<dt>countBy</dt>
<dd>Either "record" for record-level counts or "person" for
person-level counts</dd>
<dt>concept</dt>
<dd>TRUE or FALSE. If TRUE code use will be summarised by concept.</dd>
<dt>interval</dt>
<dd>Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".</dd>
<dt>sex</dt>
<dd>TRUE or FALSE. If TRUE code use will be summarised by sex.</dd>
<dt>ageGroup</dt>
<dd>A list of ageGroup vectors of length two. Code use will be
thus summarised by age groups.</dd>
<dt>dateRange</dt>
<dd>A vector of two dates defining the desired study period.
Only the <code>start_date</code> column of the OMOP table is checked to ensure it falls within this range.
If <code>dateRange</code> is <code>NULL</code>, no restriction is applied.</dd></dl>

Arguments

Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted. — summariseConceptCounts

<dl>

<dt>cdm</dt>
<dd>A cdm object</dd>


<dt>conceptId</dt>
<dd>List of concept IDs to summarise.</dd>


<dt>countBy</dt>
<dd>Either "record" for record-level counts or "person" for
person-level counts</dd>


<dt>concept</dt>
<dd>TRUE or FALSE. If TRUE code use will be summarised by concept.</dd>


<dt>interval</dt>
<dd>Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".</dd>


<dt>sex</dt>
<dd>TRUE or FALSE. If TRUE code use will be summarised by sex.</dd>


<dt>ageGroup</dt>
<dd>A list of ageGroup vectors of length two. Code use will be
thus summarised by age groups.</dd>


<dt>dateRange</dt>
<dd>A vector of two dates defining the desired study period.
Only the <code>start_date</code> column of the OMOP table is checked to ensure it falls within this range.
If <code>dateRange</code> is <code>NULL</code>, no restriction is applied.</dd>

</dl>

summariseConceptCounts: Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Description

Usage

Value

Arguments