summariseMissingData

Summarise missing data in omop tables

Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.

Cecilia Campanile

OmopSketch

Characterise Tables of an OMOP Common Data Model Instance

Marta Alcalde-Herraiz

Kim Lopez-Guell

Elin Rowlands

Edward Burn

Martí Català

summariseMissingData function

<dl><dt>cdm</dt>
<dd>A cdm object</dd>
<dt>omopTableName</dt>
<dd>A character vector of the names of the tables to
summarise in the cdm object.</dd>
<dt>col</dt>
<dd>A character vector of column names to check for missing values.
If <code>NULL</code>, all columns in the specified tables are checked. Default is <code>NULL</code>.</dd>
<dt>sex</dt>
<dd>TRUE or FALSE. If TRUE code use will be summarised by sex.</dd>
<dt>year</dt>
<dd>deprecated</dd>
<dt>interval</dt>
<dd>Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".</dd>
<dt>ageGroup</dt>
<dd>A list of ageGroup vectors of length two. Code use will be
thus summarised by age groups.</dd>
<dt>sample</dt>
<dd>An integer to sample the table to only that number of records.
If NULL no sample is done.</dd>
<dt>dateRange</dt>
<dd>A vector of two dates defining the desired study period.
Only the <code>start_date</code> column of the OMOP table is checked to ensure it falls within this range.
If <code>dateRange</code> is <code>NULL</code>, no restriction is applied.</dd></dl>

Arguments

Summarise missing data in omop tables — summariseMissingData

<dl>

<dt>cdm</dt>
<dd>A cdm object</dd>


<dt>omopTableName</dt>
<dd>A character vector of the names of the tables to
summarise in the cdm object.</dd>


<dt>col</dt>
<dd>A character vector of column names to check for missing values.
If <code>NULL</code>, all columns in the specified tables are checked. Default is <code>NULL</code>.</dd>


<dt>sex</dt>
<dd>TRUE or FALSE. If TRUE code use will be summarised by sex.</dd>


<dt>year</dt>
<dd>deprecated</dd>


<dt>interval</dt>
<dd>Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".</dd>


<dt>ageGroup</dt>
<dd>A list of ageGroup vectors of length two. Code use will be
thus summarised by age groups.</dd>


<dt>sample</dt>
<dd>An integer to sample the table to only that number of records.
If NULL no sample is done.</dd>


<dt>dateRange</dt>
<dd>A vector of two dates defining the desired study period.
Only the <code>start_date</code> column of the OMOP table is checked to ensure it falls within this range.
If <code>dateRange</code> is <code>NULL</code>, no restriction is applied.</dd>

</dl>

summariseMissingData: Summarise missing data in omop tables

Description

Usage

Value

Arguments