OmopSketch (version 0.3.2)

summariseObservationPeriod: Summarise the observation period table getting some overall statistics in a summarised_result object.

Description

Summarise the observation period table getting some overall statistics in a summarised_result object.

Usage

summariseObservationPeriod(
  observationPeriod,
  estimates = c("mean", "sd", "min", "q05", "q25", "median", "q75", "q95", "max",
    "density"),
  byOrdinal = TRUE,
  ageGroup = NULL,
  sex = FALSE,
  dateRange = NULL
)

Value

A summarised_result object with the summarised data.

Arguments

observationPeriod

observation_period omop table.

estimates

Estimates to summarise the variables of interest ( records per person, duration in days and days to next observation period).

byOrdinal

Boolean variable. Whether to stratify by the ordinal observation period (e.g., 1st, 2nd, etc.) (TRUE) or simply analyze overall data (FALSE)

ageGroup

A list of age groups to stratify results by.

sex

Boolean variable. Whether to stratify by sex (TRUE) or not (FALSE).

dateRange

A vector of two dates defining the desired study period. Only the start_date column of the OMOP table is checked to ensure it falls within this range. If dateRange is NULL, no restriction is applied.

Examples

# \donttest{
library(dplyr, warn.conflicts = FALSE)

cdm <- mockOmopSketch(numberIndividuals = 100)

result <- summariseObservationPeriod(cdm$observation_period)

result |>
  glimpse()

PatientProfiles::mockDisconnect(cdm)
# }