OmopSketch (version 0.5.1)

summariseConceptSetCounts: Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Description

Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.

Usage

summariseConceptSetCounts(
  cdm,
  conceptSet,
  countBy = c("record", "person"),
  concept = TRUE,
  interval = "overall",
  sex = FALSE,
  ageGroup = NULL,
  dateRange = NULL
)

Value

A summarised_result object with results overall and, if specified, by strata.

Arguments

cdm

A cdm object

conceptSet

List of concept IDs to summarise.

countBy

Either "record" for record-level counts or "person" for person-level counts

concept

TRUE or FALSE. If TRUE code use will be summarised by concept.

interval

Time interval to stratify by. It can either be "years", "quarters", "months" or "overall".

sex

TRUE or FALSE. If TRUE code use will be summarised by sex.

ageGroup

A list of ageGroup vectors of length two. Code use will be thus summarised by age groups.

dateRange

A vector of two dates defining the desired study period. Only the start_date column of the OMOP table is checked to ensure it falls within this range. If dateRange is NULL, no restriction is applied.

Examples

# \donttest{
library(OmopSketch)

cdm <- mockOmopSketch()

cs <- list(sinusitis = c(4283893, 257012, 40481087, 4294548))

results <- summariseConceptSetCounts(cdm, conceptSet = cs)

results

PatientProfiles::mockDisconnect(cdm)
# }