OmopSketch (version 0.5.1)

tableConceptIdCounts: Create a visual table from a summariseConceptIdCounts() result.

Description

Create a visual table from a summariseConceptIdCounts() result.

Usage

tableConceptIdCounts(result, display = "overall", type = "reactable")

Value

A reactable or datatable object with the summarised data.

Arguments

result

A summarised_result object.

display

A character string indicating which subset of the data to display. Options are:

• "overall": Show all source and standard concepts.

• "standard": Show only standard concepts.

• "source": Show only source codes.

• "missing standard": Show only source codes that are missing a mapped standard concept.

type

Type of formatting output table, either "reactable" or "datatable".

Examples

# \donttest{
library(OmopSketch)
library(CDMConnector)
library(duckdb)

requireEunomia()
con <- dbConnect(duckdb(), eunomiaDir())
cdm <- cdmFromCon(con = con, cdmSchema = "main", writeSchema = "main")

result <- summariseConceptIdCounts(cdm = cdm, omopTableName = "condition_occurrence")
tableConceptIdCounts(result = result, display = "standard")
# }