OmopSketch (version 1.0.0)

plotConceptSetCounts: Plot the concept counts of a summariseConceptSetCounts output

Description

Usage

plotConceptSetCounts(result, facet = NULL, colour = NULL)

Value

A plot visualisation.

Arguments

result

A summarised_result object (output of summariseConceptSetCounts()).

facet

Columns to face by. Formula format can be provided. See possible columns to face by with: visOmopResults::tidyColumns().

colour

Columns to colour by. See possible columns to colour by with: visOmopResults::tidyColumns().

Examples

# \donttest{
library(dplyr)
library(OmopSketch)
library(omock)

cdm <- mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")

result <- summariseConceptSetCounts(
  cdm = cdm,
  conceptSet = list(
    "asthma" = c(4051466, 317009),
    "rhinitis" = c(4280726, 4048171, 40486433)
  )
)

result |>
  filter(variable_name == "Number subjects") |>
  plotConceptSetCounts(
    facet = "codelist_name",
    colour = "standard_concept_name"
  )

cdmDisconnect(cdm = cdm)
# }