OmopSketch (version 1.0.1)

tableMissingData: Create a visual table from a summariseMissingData() result

Description

Create a visual table from a summariseMissingData() result

Usage

tableMissingData(
  result,
  header = "cdm_name",
  hide = c("variable_name", omopgenerics::settingsColumns(result)),
  groupColumn = c("omop_table", omopgenerics::strataColumns(result)),
  type = NULL,
  style = NULL
)

Value

A formatted table visualisation.

Arguments

result

A summarised_result object (output of summariseMissingData()).

header

A vector specifying the elements to include in the header. The order of elements matters, with the first being the topmost header.

hide

Columns to drop from the output table.

groupColumn

Columns to use as group labels, to see options use visOmopResults::tableColumns(result).

type

Character string specifying the desired output table format. See visOmopResults::tableType() for supported table types. If type = NULL, global options (set via visOmopResults::setGlobalTableOptions()) will be used if available; otherwise, a default 'gt' table is created.

style

Defines the visual formatting of the table. This argument can be provided in one of the following ways:

1. Pre-defined style: Use the name of a built-in style (e.g., "darwin"). See visOmopResults::tableStyle() for available options.

2. YAML file path: Provide the path to an existing .yml file defining a new style.

3. List of custome R code: Supply a block of custom R code or a named list describing styles for each table section. This code must be specific to the selected table type.

If style = NULL, the function will use global options (seevisOmopResults::setGlobalTableOptions()) or a _brand.yml file (if found); otherwise, the default style is applied.

Examples

# \donttest{
library(OmopSketch)
library(omock)

cdm <- mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")

result <- summariseMissingData(
  cdm = cdm,
  omopTableName = c("condition_occurrence", "visit_occurrence")
)

tableMissingData(result = result)

cdmDisconnect(cdm = cdm)
# }