OncoSimulR (version 2.2.2)

OncoSimulWide2Long: Convert the pops.by.time component of an oncosimul object into "long" format.

Description

Conver the pops.by.time component from its "wide" format (with one column for time, and as many columns as clones/genotypes) into "long" format, so that it can be used with other functions, for instance for plots.

Usage

OncoSimulWide2Long(x)

Arguments

x

An object of class oncosimul or oncosimul2.

Value

A data frame with four columns: Time; Y, the number of cells (the population size); Drivers, a factor with the number of drivers of the given genotype; Genotype, the genotyp.

See Also

oncoSimulIndiv

Examples

data(examplePosets)
## An object of class oncosimul
p705 <- examplePosets[["p705"]]
p1 <- oncoSimulIndiv(p705)
class(p1)
lp1 <- OncoSimulWide2Long(p1)
head(lp1)
summary(lp1)

## An object of class oncosimul2
data(examplesFitnessEffects)

sm <-  oncoSimulIndiv(examplesFitnessEffects$cbn1,
                       model = "McFL", 
                       mu = 5e-7,
                       detectionSize = 1e8, 
                       detectionDrivers = 2,
                       sampleEvery = 0.025,
                       keepEvery = 5,
                       initSize = 2000,
                       onlyCancer = FALSE)
class(sm)
lsm <- OncoSimulWide2Long(sm)
head(lsm)
summary(lsm)