mcfLs

Trimmed output from the simulation mcfLs in the vignette. This is a
 somewhat long run, and we have stored here the object (after trimming
 the Genotype matrix) to allow for plotting it.

datasets

Functions for forward population genetic simulation in
asexual populations, with special focus on cancer progression.
Fitness can be an arbitrary function of genetic interactions between
multiple genes or modules of genes, including epistasis, order
restrictions in mutation accumulation, and order effects.  Simulations
use continuous-time models and can include driver and passenger genes
and modules.  Also included are functions for simulating random DAGs
of the type found in Oncogenetic Tress, Conjunctive Bayesian Networks,
and other tumor progression models, and for plotting and sampling from
single or multiple realizations of the simulations, including
single-cell sampling, as well as functions for plotting the true
phylogenetic relationships of the clones.

Ramon Diaz-Uriarte

OncoSimulR

Forward Genetic Simulation of Cancer Progresion with Epistasis

mcfLs function

Format

Trimmed output from the simulation mcfLs in the vignette. This is a
  somewhat long run, and we have stored here the object (after trimming
  the Genotype matrix) to allow for plotting it.

mcfLs: mcfLs simulation from the vignette

Description

Usage

Arguments

Format

See Also

Examples