get_rf_pred

Predict the subtypes of selected cancer type

Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.

Dadong Zhang

OncoSubtype

Predict Cancer Subtypes Based on TCGA Data using Machine
Learning Method

get_rf_pred function

<dl><dt>train_set</dt>
<dd>training set with rownames of samples, first column named 'mRNA_subtype' and the rest of features and expression values.</dd>
<dt>test_set</dt>
<dd>test set with rownames of features and colnames of samples.</dd>
<dt>method</dt>
<dd>character string of the method to use currently support 'rf'.</dd>
<dt>seed</dt>
<dd>integer seed to use.</dd></dl>

Arguments

Predict the subtypes of selected cancer type — get_rf_pred

<dl>

<dt>train_set</dt>
<dd>training set with rownames of samples, first column named 'mRNA_subtype' and the rest of features and expression values.</dd>


<dt>test_set</dt>
<dd>test set with rownames of features and colnames of samples.</dd>


<dt>method</dt>
<dd>character string of the method to use currently support 'rf'.</dd>


<dt>seed</dt>
<dd>integer seed to use.</dd>

</dl>

get_rf_pred: Predict the subtypes of selected cancer type

Description

Usage

Value

Arguments