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Oncotree (version 0.3.5)
Estimating Oncogenetic Trees
Description
Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002)
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Version
0.3.5
0.3.4
0.3.3
0.3.2
0.3.1
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Install
install.packages('Oncotree')
Monthly Downloads
255
Version
0.3.5
License
GPL (>= 2)
Issues
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Repository
https://github.com/anikoszabo/Oncotree
Maintainer
Aniko Szabo
Last Published
September 27th, 2023
Functions in Oncotree (0.3.5)
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Oncotree-package
Constructing and evaluating oncogenetic trees
ov.cgh
Ovarian cancer CGH data
internal.oncotree
Undocumented internal functions for the Oncotree package
ancestors
Find ancestors within an oncogenetic tree.
error.rates<-
Set the error rates of an oncotree manually
bootstrap
Bootstrap an oncogenetic tree to assess stability
oncotree
Build and display an oncogenetic tree
generate.data
Generate random data from an oncogenetic tree
distribution.oncotree
Find the event distribution defined by an oncogenetic tree