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Oncotree (version 0.3.5)

Estimating Oncogenetic Trees

Description

Construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis as described in Szabo, A. and Boucher, K (2002) .

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Install

install.packages('Oncotree')

Monthly Downloads

244

Version

0.3.5

License

GPL (>= 2)

Issues

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Maintainer

Aniko Szabo

Last Published

September 27th, 2023

Functions in Oncotree (0.3.5)

Oncotree-package

Constructing and evaluating oncogenetic trees
ov.cgh

Ovarian cancer CGH data
internal.oncotree

Undocumented internal functions for the Oncotree package
ancestors

Find ancestors within an oncogenetic tree.
error.rates<-

Set the error rates of an oncotree manually
bootstrap

Bootstrap an oncogenetic tree to assess stability
oncotree

Build and display an oncogenetic tree
generate.data

Generate random data from an oncogenetic tree
distribution.oncotree

Find the event distribution defined by an oncogenetic tree