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Oncotree (version 0.3.2)

Estimating oncogenetic trees

Description

Contains functions to construct and evaluate directed tree structures that model the process of occurrence of genetic alterations during carcinogenesis.

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Version

Install

install.packages('Oncotree')

Monthly Downloads

244

Version

0.3.2

License

GPL (>= 2)

Maintainer

Aniko Szabo

Last Published

November 13th, 2012

Functions in Oncotree (0.3.2)

error.rates<-

Set the error rates of an oncotree manually

distribution.oncotree

Find the event distribution defined by an oncogenetic tree

Oncotree-package

Constructing and evaluating oncogenetic trees

generate.data

Generate random data from an oncogenetic tree

internal.oncotree

Undocumented internal functions for the Oncotree package

bootstrap

Bootstrap an oncogenetic tree to assess stability

oncotree

Build and display an oncogenetic tree

ancestors

Find ancestors within an oncogenetic tree.

ov.cgh

Ovarian cancer CGH data