OpenTreeChronograms (version 2022.1.28)

extract_ott_ids: Get OTT ids from a character vector containing species names and OTT ids.

Description

Get OTT ids from a character vector containing species names and OTT ids.

Usage

extract_ott_ids(x, na.rm = TRUE)
# S3 method for default
extract_ott_ids(x, na.rm = TRUE)

Arguments

x

A character vector of taxon names, or a phylo object with tip names containing OTT ids.

na.rm

A logical value indicating whether NA values should be stripped from the output.

Value

An object of class numeric containing OTT ids only.

NULL

Examples

# NOT RUN {
canis <- rotl::tnrs_match_names("canis")
canis_taxonomy <- rotl::taxonomy_subtree(canis$ott_id)
my_ott_ids <- extract_ott_ids(x = canis_taxonomy$tip_label)
# Get the problematic elements from input
canis_taxonomy$tip_label[attr(my_ott_ids, "na.action")]
# }