preparePermutations

logical, whether samples in classes are paired.

paired

number of permutations and subsets to be drawn.

how many of the samples in a class are to be subsampled.

sample.ratio


  For a dataset specified with matrix and class labels, draws permutations
  and subsets.


internal

Detection of similarities between ordered lists of genes.
Thereby, either simple lists can be compared or gene expression
data can be used to deduce the lists. Significance of
similarities is evaluated by shuffling lists or by resampling
in microarray data, respectively.

Claudio Lottaz

OrderedList

Similarities of Ordered Gene Lists

preparePermutations function

For a dataset specified with matrix and class labels, draws permutations
  and subsets.

preparePermutations: Prepare Permutation and Subsetting Matrices

Description

Usage

Arguments

Value