mouse_bodycontour

Contains plotting coordinates for the mouse body contour, used for drawing the background outline in mouse visualization.

datasets

A tool for visualizing numerical data (e.g., gene expression, protein abundance) on predefined anatomical maps of human/mouse organs and subcellular organelles. It supports customization of color schemes, filtering by organ systems (for organisms) or organelle types, and generation of optional bar charts for quantitative comparison. The package integrates coordinate data for organs and organelles to plot anatomical/subcellular contours, mapping data values to specific structures for intuitive visualization of biological data distribution.The underlying method was described in the preprint by Zhou et al. (2022) <doi:10.1101/2022.09.07.506938>.

Qirui Shen

OrgHeatmap

Visualization Tool for Numerical Data on Human/Mouse Organs and
Organelles

mouse_bodycontour function

A data frame containing:<dl>
<dt><code>V1</code></dt>
<dd>Integer. Original index from source data (reserved for compatibility).</dd><dt><code>id</code></dt>
<dd>Character. Group identifier for contour segments (used to draw connected regions).</dd><dt><code>x</code></dt>
<dd>Numeric. X-coordinate of contour points.</dd><dt><code>y</code></dt>
<dd>Numeric. Y-coordinate of contour points.</dd>
</dl>

Format

Mouse body contour coordinate data — mouse_bodycontour

A data frame containing:<dl>
<dt><code>V1</code></dt>
<dd>Integer. Original index from source data (reserved for compatibility).</dd>

<dt><code>id</code></dt>
<dd>Character. Group identifier for contour segments (used to draw connected regions).</dd>

<dt><code>x</code></dt>
<dd>Numeric. X-coordinate of contour points.</dd>

<dt><code>y</code></dt>
<dd>Numeric. Y-coordinate of contour points.</dd>


</dl>

mouse_bodycontour: Mouse body contour coordinate data

Description

Usage

Arguments

Format