mouse_organ_coord

Contains plotting coordinates (x, y) for each mouse organ, used for drawing organ contours in mouse visualization.

datasets

A tool for visualizing numerical data (e.g., gene expression, protein abundance) on predefined anatomical maps of human/mouse organs and subcellular organelles. It supports customization of color schemes, filtering by organ systems (for organisms) or organelle types, and generation of optional bar charts for quantitative comparison. The package integrates coordinate data for organs and organelles to plot anatomical/subcellular contours, mapping data values to specific structures for intuitive visualization of biological data distribution.The underlying method was described in the preprint by Zhou et al. (2022) <doi:10.1101/2022.09.07.506938>.

Qirui Shen

OrgHeatmap

Visualization Tool for Numerical Data on Human/Mouse Organs and
Organelles

mouse_organ_coord function

A list where each element is a data frame containing:<dl>
<dt>x</dt>
<dd>x-coordinate (numeric)</dd><dt>y</dt>
<dd>y-coordinate (numeric)</dd><dt>id</dt>
<dd>Group ID (for drawing polygons, integer)</dd>
</dl>

Format

Mouse organ coordinate data — mouse_organ_coord

A list where each element is a data frame containing:<dl>
<dt>x</dt>
<dd>x-coordinate (numeric)</dd>

<dt>y</dt>
<dd>y-coordinate (numeric)</dd>

<dt>id</dt>
<dd>Group ID (for drawing polygons, integer)</dd>


</dl>

mouse_organ_coord: Mouse organ coordinate data

Description

Usage

Arguments

Format