mouse_organ_systems

Defines the physiological system each mouse organ belongs to, used for filtering organs by system in mouse visualization.

datasets

A tool for visualizing numerical data (e.g., gene expression, protein abundance) on predefined anatomical maps of human/mouse organs and subcellular organelles. It supports customization of color schemes, filtering by organ systems (for organisms) or organelle types, and generation of optional bar charts for quantitative comparison. The package integrates coordinate data for organs and organelles to plot anatomical/subcellular contours, mapping data values to specific structures for intuitive visualization of biological data distribution.The underlying method was described in the preprint by Zhou et al. (2022) <doi:10.1101/2022.09.07.506938>.

Qirui Shen

OrgHeatmap

Visualization Tool for Numerical Data on Human/Mouse Organs and
Organelles

mouse_organ_systems function

A data frame with the following columns:<dl>
<dt>organ</dt>
<dd>Organ name (character, standardized name)</dd><dt>system</dt>
<dd>Belonging system (character, e.g., "circulatory" for circulatory system)</dd>
</dl>

Format

Mouse Organ-system mapping data — mouse_organ_systems

A data frame with the following columns:<dl>
<dt>organ</dt>
<dd>Organ name (character, standardized name)</dd>

<dt>system</dt>
<dd>Belonging system (character, e.g., "circulatory" for circulatory system)</dd>


</dl>

mouse_organ_systems: Mouse Organ-system mapping data

Description

Usage

Arguments

Format