OrganismDbi (version 1.14.1)

Software to enable the smooth interfacing of different database packages

Description

The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.

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Version

1.14.1

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

January 1st, 1970

Functions in OrganismDbi (1.14.1)

makeOrganismDbFromBiomart

Make a OrganismDb object from annotations available on a BioMart database

MultiDb-class

MultiDb and OrganismDb objects

makeOrganismPackage

Making OrganismDb packages from annotation packages.

rangeBasedAccessors

Extract genomic features from an object

makeOrganismDbFromUCSC

Make a OrganismDb object from annotations available at the UCSC Genome Browser

makeOrganismDbFromTxDb

Make an OrganismDb object from an existing TxDb object.

mapToTranscripts

Map range coordinates between transcripts and genome space