Oscope-package:
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Description
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles
of oscillating genes in an unsynchronized single cell RNA-seq experiment.
The Oscope pipeline includes three modules: a sine model module to search for
candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators
into groups; and an extended nearest insertion module to recover the base cycle order
for each oscillator group.
Details
|
Package: |
| Oscope |
|
Type: |
| Package |
|
Version: |
| 0.99.0 |
|
Date: |
| 2015-7-27 |
|
License: |
| Artistic-2.0 |
References
Leng et al. Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq, accepted