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MPI temporal estimation of isotopic values

R Package to estimate isotopic values in the past and their change over time.

Stan Development

  • The precompiled stanmodel objects will appear in a named list called 'stanmodels',

and you can call them with something like rstan::sampling(stanmodels$foo, ...)

  • You can put into src/stan_files/chunks any file that is needed by any .stan file in src/stan_files,
  • You can put into inst/include any C++ files that are needed by any .stan file in src/stan_files,

but be sure to #include your C++ files in inst/include/meta_header.hpp

  • While developing your package use devtools::install('.', local=FALSE)

to reinstall the package AND recompile Stan programs, or set local=FALSE to skip the recompilation.

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Version

Install

install.packages('OsteoBioR')

Monthly Downloads

1

Version

0.1.1

License

GPL (>= 3)

Maintainer

Marcus Gross

Last Published

November 15th, 2018

Functions in OsteoBioR (0.1.1)

estimateIntervals

Function to estimate temporal changes in isotopic values
plot,TemporalIso,missing-method

Plots for TemporalIso objects
plotTime

Plot of credibility intervals for each time interval, plotted as timeseries
estimateTimePoint

Function to estimate isotopic value for specific time point(s)
export

Export of TemporalIso samples as csv
getShiftTime

Calculate time points of shifted isotopic values
getSiteStayTimes

Calculate estimated stay times for locations given isotopic values
computeResult

Function to compute resulting isotopic values out of historic ones
OsteoBioR-package

The 'OsteoBioR' package.
TemporalIso-class

S4 class for temporal estimation of isotopic values