JSON2obkData

a character string containing data on individuals in JSON format

individuals

a character string containing data on records and samples in JSON format

records

a character string containing data on contacts in JSON format

contacts

a character string containing data on context in JSON format

context

<code>JSON2obkData</code> imports outbreak data stored in one or several
 JSON files and converts it into an <a href="/link/?package=OutbreakTools&version=0.1-16" obkdata'="" data-mini-rdoc="OutbreakTools::"></a>'>obkData object.
! This feature is currently experimental !

Implements basic tools for storing, handling and visualizing disease outbreak data, as well as simple analysis tools. OutbreakTools defines the new formal class obkData which can be used to store any case-base outbreak data, and provides summaries for these objects, alongside a range of functions for subsetting and data manipulation. It implements a range of graphics for visualising timelines, maps, contact networks and genetic analyses. It also includes a simple case-base outbreak simulation tool.

Thibaut Jombart

OutbreakTools

Basic Tools for the Analysis of Disease Outbreaks

JSON2obkData function

<code>JSON2obkData</code> imports outbreak data stored in one or several
 JSON files and converts it into an <a href='<a href='obkData'></a>'>obkData</a> object.
! This feature is currently experimental !

JSON2obkData: Import data from JSON file into OutbreakTools

Description

Usage

Arguments

Value