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P2C2M (version 0.7.6)

Posterior Predictive Checks of Coalescent Models

Description

Conducts posterior predictive checks of coalescent models using gene and species trees generated by 'BEAST' or '*BEAST'. The functionality of P2C2M can be extended via two third-party R packages that are available from the author websites: 'genealogicalSorting' and 'phybase'. To use these optional packages, the installation of the Python libraries 'NumPy' (>= 1.9.0) and 'DendroPy' (= 3.12.0) is required.

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Install

install.packages('P2C2M')

Monthly Downloads

9

Version

0.7.6

License

GPL (>= 2)

Maintainer

Michael Gruenstaeudl

Last Published

June 10th, 2015

Functions in P2C2M (0.7.6)

p2c2m.complete

Execute the complete P2C2M pipeline via a single command
sim.E.003.small

Output of the data set 'sim.E.003.small'
P2C2M-package

Posterior Predictive Checks of Coalescent Models
viz_example_2

Data set of visualization example 2
viz_example_1

Data set of visualization example 1