MINetworkPlot_topEdges

dataMatrix

<p>the maximum number of edges to draw for each subpopulation mutual information network</p>

threshold

<p>Plots mutual information network (mrnet algorithm) connection using the parmigene package. Mutual information calculated with infotheo package.</p>

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

Ye Li

Partition-Assisted Clustering and Multiple Alignments of
Networks

MINetworkPlot_topEdges function

Plots mutual information network (mrnet algorithm) connection using the parmigene package. Mutual information calculated with infotheo package. — MINetworkPlot_topEdges

MINetworkPlot_topEdges: Plots mutual information network (mrnet algorithm) connection using the parmigene package. Mutual information calculated with infotheo package.

Description

Usage

Arguments