annotateClades

sampleIDs

<p>number of top ranked genes to output for annotation; annotation is a concatenated list of top ranked genes.</p>

topHubs

<p>Creates annotation matrix for the clades in aggregated format. The matrix contains average signals of each dimension for each clade in each sample</p>

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

Ye Li

Partition-Assisted Clustering and Multiple Alignments of
Networks

annotateClades function

Creates annotation matrix for the clades in aggregated format. The matrix contains average signals of each dimension for each clade in each sample — annotateClades

annotateClades: Creates annotation matrix for the clades in aggregated format. The matrix contains average signals of each dimension for each clade in each sample

Description

Usage

Arguments

Value