getAverageSpreadOf2SubpopClades

t-SNE output of clade centroids' embedding.

tsneResults

PAC-MAN analysis result matrix that contains network annotation, clade IDs and mean (centroid) clade expression levels.

pacman_results

Calculate the (global) average spread of subpopulations in clades with 2 subpopulations on the constellation plot.

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

getAverageSpreadOf2SubpopClades: Calculate the (global) average spread of subpopulations in clades with 2 subpopulations on the constellation plot.

Description

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