outputNetworks_topEdges_matrix

data matrix with first column being the sample ID

dataMatrix

subpopulationLabels

the number of edges to draw for each subpopulation mutual information network

threshold

Wrapper to output the mutual information networks for subpopulations with size larger than a desired threshold.

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

outputNetworks_topEdges_matrix: Wrapper to output the mutual information networks for subpopulations with size larger than a desired threshold.

Description

Usage

Arguments