recordWithinClusterSpread

sampleIDs

a string vector of string names to subset the data columns for PAC; set to NULL to use all columns.

dim_subset

threshold to filter out very small clusters with too few points; these very small subpopulations may not be outliers and not biologically relevant.

SubpopSizeFilter

Calculates the within cluster spread

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

recordWithinClusterSpread: Calculates the within cluster spread

Description

Usage

Arguments

Value