renamePrunedSubpopulations

PAC-MAN analysis result matrix that contains network annotation, clade IDs and mean (centroid) clade expression levels.

pacman_results

A vector of clade IDs; these clades will be pruned.

subpopulationsToPrune

Prune away specified subpopulations in clades that are far away.

Implements partition-assisted clustering and multiple alignments of networks. It 1) utilizes partition-assisted clustering to find robust and accurate clusters and 2) discovers coherent relationships of clusters across multiple samples. It is particularly useful for analyzing single-cell data set. Please see Li et al. (2017) <doi:10.1371/journal.pcbi.1005875> for detail method description.

renamePrunedSubpopulations: Prune away specified subpopulations in clades that are far away.

Description

Usage

Arguments

Value