Learn R Programming

PAFway (version 0.1.3)

Pairwise Association of Functional Annotations

Description

Finds pairs of functional annotations or gene ontology (GO) terms that are enriched within a directed network (such as a gene regulatory network). This works with or without edge weights and includes visualizations (both as a network where the functions are nodes and as a heatmap). PAFway is an acronym for Pairwise Associations of Functional annotations in biological networks and pathWAYs.

Copy Link

Version

Install

install.packages('PAFway')

Monthly Downloads

4

Version

0.1.3

License

GPL (>= 2)

Maintainer

Daphne Ezer

Last Published

February 5th, 2020

Functions in PAFway (0.1.3)

pafway

Find pairwise-associations between annotations in a network without edge weights.
draw_heatmap

Draw network of enriched functional annotation pairs as a heatmap
draw_network

Draw network of enriched functional annotation pairs
pafway_edge_weights

Find pairwise-associations between annotations in a network with edge weights.
pafway_meta

Compare the frequency of observed edges of a specific type and the expected frequency of these edges, given the presence of a different edge type