PALMO (version 0.1.2)

createPALMOfromsinglecellmatrix: createPALMOfromsinglecellmatrix Function

Description

This function allows to create Seurat object from counts and metadata as mentioned in https://search.r-project.org/CRAN/refmans/SeuratObject/html/CreateSeuratObject.html. The seurat object then stored in a newly created PALMO object.

Usage

createPALMOfromsinglecellmatrix(data, metadata, anndata = NULL)

Value

PALMO object with scRNA

Arguments

data

Expression matrix or data frame. Rows represents gene/proteins column represents participant samples (same as annotation table Sample column)

metadata

Metadata associated with singe cell information. For example rownames are unique cell_barcode and columns are information on each cell_barcode like Sample (source of cell_barcode)

anndata

Annotation dataframe. It consist of information such as Sample (sample name), PTID (donor/participant), Time (longitudinal timepoints)

Examples

if (FALSE) {
palmo_obj=createPALMOfromsinglecellmatrix(counts, metadata, annotation)
}