PALMO (version 0.1.2)

outlierDetectP: outlierDetectP Function

Description

This function allows to identify significant abnormal event identified from outlier analysis.

Usage

outlierDetectP(
  outlier_events,
  z_cutoff = 2,
  nGenes,
  group_by = "PTID",
  alternative = "two.sided"
)

Value

PALMO object with outlier event p value dataframe

PALMO object with outlier event p value

Arguments

outlier_events

Identified outlier events

z_cutoff

|Z| cutoff threshold to find potential outliers (Eg. z_cutoff= 2, equals to Mean/SD 2)

nGenes

Number of background genes/features

group_by

Column name to use for groupwise outlier analysis. Default is PTID (donor or participant id).

alternative

alternative hypothesis, must be one of "one.sided" or "two.sided" (default)

Examples

if (FALSE) {
outlierDetectP(outlier_events=outlier_res, z_cutoff=2, nGenes=1043)
}