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PAMhm (version 0.1.2)

Generate Heatmaps Based on Partitioning Around Medoids (PAM)

Description

Data are partitioned (clustered) into k clusters "around medoids", which is a more robust version of K-means implemented in the function pam() in the 'cluster' package. The PAM algorithm is described in Kaufman and Rousseeuw (1990) . Please refer to the pam() function documentation for more references. Clustered data is plotted as a split heatmap allowing visualisation of representative "group-clusters" (medoids) in the data as separated fractions of the graph while those "sub-clusters" are visualised as a traditional heatmap based on hierarchical clustering.

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Version

Install

install.packages('PAMhm')

Monthly Downloads

133

Version

0.1.2

License

GPL-3

Maintainer

Vidal Fey

Last Published

September 6th, 2021

Functions in PAMhm (0.1.2)

PAMhm

Generate Heatmaps Based on Partioning Around Medoids (PAM)
PAM.hm

Main function to produce a heatmap using PAM clustering.