PANDA

The PANDA R package (Preferential Attachment based common Neighbor Distribution derived Associations) was designed to perform the following tasks: (1) identify significantly functionally associated protein pairs, (2) predict GO and KEGG terms for proteins, (3) make a cluster of proteins based on the significant protein pairs, (4) identify subclusters whose members are enriched in KEGG-pathways.

Installation

The devtools package is used to install R packages hosted on Github. To install PANDA, type the following commands in the R console:

    library(devtools)
    install_github("PANDA", "nickytong")

Usage

# load the package
library(PANDA)
	
# pull out vignette
vignette('PANDA')