PATHChange (version 1.0)

PATHChangeVenn: PATHChangeVenn

Description

The results of PATHChange are presented through Venn diagrams that provide the consensus of differentially expressed pathways using the statistical tests for the chosen significance level.

Usage

PATHChangeVenn(p.value, p, writePDF, destDIR)

Arguments

p.value

The result of the PATChange function.

p

Significance level

writePDF

TRUE for write a .pdf file result

destDIR

Destination folder for .pdf file.

Value

VennDiagram

A venn diagram with the consensus of the statistical tests.

See Also

PATHChange

Examples

pval <- list(data.frame(Pathway=paste("Path", 1:10, sep="_"), 
                        Activity=c(0.50478,0.5019,0.49059,0.49056,0.48591,0.49457,
                                   0.49228,0.49628,0.48908,0.48698),
                        Bootstrap=c(0.06911578,0.11415555,0.98059024,0.30543333, 
                                    0.02051875,0.00098,0.12326666,0.578624,0.01206153,
                                    0.86294),
                        Fisher=c(0.32619656,0.00310826,0.26249225,0.26389102,0.00060358,
                                 0.00015427,0.01796717,0.00069173,8.22E-06,0.00310826),
                        Wilcoxon=c(0.11862404,0.00502450,0.00543268,1.32E-10,0.22675787,
                                   8.45E-06,0.46767425,4.51E-17,9.11E-08,0.00467674)))
PATHChangeVenn(p.value=pval, p=0.05, writePDF=FALSE)