PBD-package: Protracted birth-death model of diversification
Description
This package computes the (maximum) likelihood of the protracted speciation model for a given set of branching times
Arguments
Details
ll{
Package: PBD
Type: Package
Version: 0.8
Date: 2014-4-1
License: GPL-2
}
pbd_loglik computes the likelihood of the protracted birth-death model of
diversification, given a set of parameters and a data set of phylogenetic branching times.
pbd_ML finds the parameters that maximizes the likelihood computed by pbd_loglik.
References
- Etienne, R.S. & J. Rosindell 2012. Systematic Biology 61: 204-213.
- Lambert, A., H. Morlon & R.S. Etienne 2014. Journal of Mathmematical Biology. In press
- Etienne, R.S., H. Morlon & A. Lambert 2014. Evolution. In press.