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PBD (version 1.0)

Protracted birth-death model of diversification

Description

Maximum likelihood analysis of the protracted speciation model

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Version

Install

install.packages('PBD')

Monthly Downloads

356

Version

1.0

License

GPL-2

Maintainer

Rampal Etienne

Last Published

May 26th, 2014

Functions in PBD (1.0)

PBD-package

Protracted birth-death model of diversification
pbd_bootstrap

Bootstrap analysis under protracted birth-death model of diversification
pbd_durspec_var

Variance in duration of speciation under protracted birth-death model of diversification
pbd_sim_cpp

Function to simulate the approximate protracted speciation process
pbd_durspec_density

Probability density for duration of speciation under protracted birth-death model of diversification
PBD-internal

Internal PBD Functions
pbd_loglik

Loglikelihood for protracted birth-death model of diversification
pbd_durspec_cumdensity

Cumulative density of duration of speciation under protracted birth-death model of diversification
pbd_brts_density

Node depth probbaility density for protracted birth-death model of diversification
pbd_sim

Function to simulate the protracted speciation process
pbd_durspec_mean

Mean duration of speciation under protracted birth-death model of diversification
pbd_ML

Maximization of loglikelihood under protracted birth-death model of diversification
pbd_durspec_mode

mode of the duration of speciation under protracted birth-death model of diversification
pbd_durspec_quantile

Quantiles of duration of speciation under protracted birth-death model of diversification
pbd_durspec_moment

Moments of duration of speciation under protracted birth-death model of diversification