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PBD (version 1.1)
Protracted Birth-Death Model of Diversification
Description
Conducts maximum likelihood analysis and simulation of the protracted speciation model.
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Install
install.packages('PBD')
Monthly Downloads
200
Version
1.1
License
GPL-2
Maintainer
Rampal Etienne
Last Published
September 29th, 2015
Functions in PBD (1.1)
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pbd_durspec_mean
Mean duration of speciation under protracted birth-death model of diversification
pbd_durspec_density
Probability density for duration of speciation under protracted birth-death model of diversification
pbd_durspec_moment
Moments of duration of speciation under protracted birth-death model of diversification
pbd_durspec_quantile
Quantiles of duration of speciation under protracted birth-death model of diversification
pbd_sim_cpp
Function to simulate the approximate protracted speciation process
PBD-package
Protracted birth-death model of diversification
pbd_loglik
Loglikelihood for protracted birth-death model of diversification
pbd_durspec_var
Variance in duration of speciation under protracted birth-death model of diversification
pbd_durspec_mode
mode of the duration of speciation under protracted birth-death model of diversification
pbd_bootstrap
Bootstrap analysis under protracted birth-death model of diversification
pbd_sim
Function to simulate the protracted speciation process
pbd_durspec_cumdensity
Cumulative density of duration of speciation under protracted birth-death model of diversification
pbd_ML
Maximization of loglikelihood under protracted birth-death model of diversification
pbd_brts_density
Node depth probbaility density for protracted birth-death model of diversification
PBD-internal
Internal PBD Functions