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PBD (version 1.3)

Protracted Birth-Death Model of Diversification

Description

Conducts maximum likelihood analysis and simulation of the protracted birth-death model of diversification. See Etienne, R.S. & J. Rosindell 2012 ; Lambert, A., H. Morlon & R.S. Etienne 2014, ; Etienne, R.S., H. Morlon & A. Lambert 2014, .

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Version

Install

install.packages('PBD')

Monthly Downloads

356

Version

1.3

License

GPL-2

Maintainer

Rampal Etienne

Last Published

April 29th, 2017

Functions in PBD (1.3)

pbd_durspec_mean

Mean duration of speciation under protracted birth-death model of diversification
pbd_durspec_mode

mode of the duration of speciation under protracted birth-death model of diversification
PBD-internal

Internal PBD Functions
PBD-package

Protracted Birth-Death Model of Diversification
pbd_bootstrap

Bootstrap analysis under protracted birth-death model of diversification
pbd_brts_density

Node depth probbaility density for protracted birth-death model of diversification
pbd_durspec_cumdensity

Cumulative density of duration of speciation under protracted birth-death model of diversification
pbd_durspec_density

Probability density for duration of speciation under protracted birth-death model of diversification
pbd_durspec_var

Variance in duration of speciation under protracted birth-death model of diversification
pbd_loglik

Loglikelihood for protracted birth-death model of diversification
pbd_sim

Function to simulate the protracted speciation process
pbd_sim_cpp

Function to simulate the approximate protracted speciation process
pbd_LR

Bootstrap likelihood ratio test of protracted birth-death model of diversification
pbd_ML

Maximization of loglikelihood under protracted birth-death model of diversification
pbd_durspec_moment

Moments of duration of speciation under protracted birth-death model of diversification
pbd_durspec_quantile

Quantiles of duration of speciation under protracted birth-death model of diversification