hsEntrezByRPath


The human genes coding for proteins involved in
the different Reactome pathways.


Phenotypes comparison based on a pathway consensus
approach. Assess the relationship between candidate genes and a
set of phenotypes based on additional genes related to the
candidate (e.g. Pathways or network neighbors).

Matthew Page

PCAN

Phenotype Consensus ANalysis (PCAN)

hsEntrezByRPath function

Format

Two ressources were used in June 2 2015: <ul>
<li><a href="http://www.reactome.org/download/current/UniProt2Reactome.txt">http://www.reactome.org/download/current/UniProt2Reactome.txt</a>
was used to get list of Uniprot ID associated to each pathway.
</li>
<li>
<a href="/link/ftp%3A%2F%2Fftp.uniprot.org%2Fpub%2Fdatabases%2Funiprot%2Fcurrent_release%2Fknowledgebase%2Fidmapping%2Fby_organism%2FHUMAN_9606_idmapping.dat.gz?package=PCAN&version=1.0.2" data-mini-rdoc="PCAN::ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz">ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/HUMAN_9606_idmapping.dat.gz</a>
was used to map Uniprot ID to Entrez gene IDs
</li>
</ul> 

Source

The human genes coding for proteins involved in
the different Reactome pathways.

hsEntrezByRPath: Homo sapiens entrez gene ID by Reactome pathway (Example data)

Description

Arguments

Format

Source

Examples