addRanks

Defines the best principle component to use for downstream analysis.

A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principal Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.

Kathryn Lande

PCBS

Principal Component BiSulfite

addRanks function

<dl><dt>ranks</dt>
<dd>getPCRanks output data frame.</dd></dl>

Arguments

Add ranks to eigenvector scores. — addRanks

<dl>

<dt>ranks</dt>
<dd>getPCRanks output data frame.</dd>

</dl>

addRanks: Add ranks to eigenvector scores.

Description

Usage

Value

Arguments

Examples