chromDict

Internal to many functions; creates a chromDict for faster computing times. chromDict can be run separately to speed up functions run iteratively.
A chromDict is a list of chromosome-specific data.tables generated from ranks.

A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principal Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.

Kathryn Lande

PCBS

Principal Component BiSulfite

chromDict function

<dl><dt>ranks</dt>
<dd>getPCRanks output data frame</dd></dl>

Arguments

Convert a rank object into a chromDict. — chromDict

<dl>

<dt>ranks</dt>
<dd>getPCRanks output data frame</dd>

</dl>

chromDict: Convert a rank object into a chromDict.

Description

Usage

Value

Arguments

Examples